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Sample GSM738165 Query DataSets for GSM738165
Status Public on Aug 01, 2011
Title muscle_control_rep7
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics age: 423d
Sex: M
strain: A/J
tumor: control
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol Reagent, followed by Qiagen DNAse1 treatment according to manufacturer's protocol. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description GES07_0176
Data processing log2-transformed Illumina average intensity data followed by quantile normalization
 
Submission date Jun 07, 2011
Last update date Aug 01, 2011
Contact name Roger Sher
E-mail(s) roger.sher@jax.org
Phone 207-288-6503
Fax 207-288-6077
Organization name The Jackson Laboratory
Street address 600 Main Street
City Bar Harbor
ZIP/Postal code 04609
Country USA
 
Platform ID GPL6481
Series (1)
GSE29775 Rhabdomyosarcomas in aging A/J mice

Data table header descriptions
ID_REF
VALUE quantile normalized log2-transformed Illumina average intensity data
Detection Pval

Data table
ID_REF VALUE Detection Pval
10243 7.5532913 0.0904554
10280 7.39198329 0.1671865
10575 8.48518255 0.00748596
20048 7.53461039 0.09731753
20296 14.0757347 0
20343 7.19635023 0.2744853
20373 7.04678519 0.4491578
20431 13.7905539 0
50014 6.69314605 0.9507174
50017 7.14469618 0.3256394
50019 12.8064779 0
50020 8.00472694 0.02183406
50022 6.67580176 0.963194
50025 6.85764994 0.768559
50026 6.95919355 0.5832813
50035 6.85577671 0.7729257
50037 8.09720619 0.01559576
50039 11.2637217 0
50040 8.51881109 0.00686213
50041 10.4361817 0

Total number of rows: 46643

Table truncated, full table size 1302 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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