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Sample GSM742408 Query DataSets for GSM742408
Status Public on Oct 25, 2012
Title 90629_CL9RTNUM
Sample type RNA
 
Source name CL9RTNUM
Organism Homo sapiens
Characteristics tissue: Normal
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalized using quantile normalization
 
Submission date Jun 15, 2011
Last update date Oct 25, 2012
Contact name Joanna Dawn Holbrook
E-mail(s) Joanna_Holbrook@sics.a-star.edu.sg
Organization name Singapore Institute of Clinical Sciences
Street address 30 Medical Drive
City Singapore
ZIP/Postal code 117609
Country Singapore
 
Platform ID GPL6947
Series (2)
GSE29998 Deep sequencing of gastric carcinoma reveals somatic mutations relevant to personalized medicine [Illumina mRNA expression array data]
GSE29999 Deep sequencing of gastric carcinoma reveals somatic mutations relevant to personalized medicine

Data table header descriptions
ID_REF
VALUE AVG_Signal = quantile normalized
Detection Pval Illumina assigned detection p-value

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 0.111011 0.4174625
ILMN_2055271 3.110616 0.3096862
ILMN_1736007 -14.67962 0.9290587
ILMN_2383229 1088.588 0
ILMN_1806310 1629.535 0
ILMN_1779670 69.51156 0
ILMN_2321282 -9.778656 0.8144611
ILMN_1671474 -11.63626 0.8567531
ILMN_1772582 8.807027 0.1732606
ILMN_1735698 5.509337 0.2455662
ILMN_1653355 -6.405139 0.6889495
ILMN_1717783 -0.2328541 0.4270123
ILMN_1705025 -11.51644 0.8540245
ILMN_1814316 -9.671196 0.8117326
ILMN_2359168 -5.996428 0.6725785
ILMN_1731507 5.858281 0.2414734
ILMN_1787689 -5.657703 0.6534789
ILMN_1745607 721.7025 0
ILMN_2136495 -1.232658 0.4638472
ILMN_1668111 -5.147241 0.6371078

Total number of rows: 48803

Table truncated, full table size 1419 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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