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Sample GSM742466 Query DataSets for GSM742466
Status Public on Oct 25, 2012
Title 90687_08362T1
Sample type RNA
 
Source name 08362T1
Organism Homo sapiens
Characteristics tissue: Normal
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalized using quantile normalization
 
Submission date Jun 15, 2011
Last update date Oct 25, 2012
Contact name Joanna Dawn Holbrook
E-mail(s) Joanna_Holbrook@sics.a-star.edu.sg
Organization name Singapore Institute of Clinical Sciences
Street address 30 Medical Drive
City Singapore
ZIP/Postal code 117609
Country Singapore
 
Platform ID GPL6947
Series (2)
GSE29998 Deep sequencing of gastric carcinoma reveals somatic mutations relevant to personalized medicine [Illumina mRNA expression array data]
GSE29999 Deep sequencing of gastric carcinoma reveals somatic mutations relevant to personalized medicine

Data table header descriptions
ID_REF
VALUE AVG_Signal = quantile normalized
Detection Pval Illumina assigned detection p-value

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 -4.439767 0.5756757
ILMN_2055271 -10.18456 0.7986487
ILMN_1736007 2.677518 0.35
ILMN_2383229 252.306 0
ILMN_1806310 363.2836 0
ILMN_1779670 22.11996 0.03513514
ILMN_2321282 -16.05972 0.9351351
ILMN_1671474 -14.63145 0.9081081
ILMN_1772582 -2.641104 0.5148649
ILMN_1735698 0.6578896 0.4054054
ILMN_1653355 20.82111 0.04054054
ILMN_1717783 -6.087726 0.6527027
ILMN_1705025 1.563087 0.3743243
ILMN_1814316 -17.48572 0.9702703
ILMN_2359168 -8.942172 0.7648649
ILMN_1731507 -3.013767 0.527027
ILMN_1787689 -6.024611 0.65
ILMN_1745607 497.5527 0
ILMN_2136495 -7.438939 0.7027027
ILMN_1668111 -14.83498 0.9108108

Total number of rows: 48803

Table truncated, full table size 1418 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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