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Sample GSM7466120 Query DataSets for GSM7466120
Status Public on Sep 06, 2023
Title endometrial biopsy, X210347
Sample type RNA
 
Source name Human endometrium
Organism Homo sapiens
Characteristics tissue: Human endometrium
age: 28
cycle stage: 6
pod: NA
batch: batch 5
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from homogenized endometrial tissues using RNA lysis solution (RLT buffer) and RNeasy Plus Mini Kit according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA was prepared using the Ambion Illumina TotalPrep RNA amplification kit.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol with Illumina iScan Reader.
Description Sample X210347 from batch 5
Data processing Data generated by Illumina iScan Reader was processed by Illumina GenomeStudio software. The data was then normalized in R using background normalization and robust spline normalization with the lumi package and batch corrected with ComBat using the sva package.
 
Submission date Jun 07, 2023
Last update date Sep 06, 2023
Contact name Peter Rogers
Organization name University of Melbourne
Department Department of Obstetrics and Gynaecology
Street address Level 7, University Department, Royal Women's Hospital, Crn Grattan Street and Flemington Rd
City Parkville
State/province VIC
ZIP/Postal code 3052
Country Australia
 
Platform ID GPL10558
Series (2)
GSE234368 Gene expression profiles of endometrium from women across the menstrual cycle
GSE234434 A molecular staging model for accurately dating the endometrial biopsy

Data table header descriptions
ID_REF
VALUE Normalized log2 intensity values processed in R.
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 4.63562685677672 0.06233766
ILMN_2055271 4.88788295560742 0.04805195
ILMN_1736007 4.68122450530687 0.03636364
ILMN_2383229 4.39887024865068 0.3974026
ILMN_1806310 4.5372471481216 0.138961
ILMN_1779670 4.26276903885672 0.874026
ILMN_1653355 4.73092064431989 0.06363636
ILMN_1717783 4.24277767756622 0.9103896
ILMN_1705025 4.39460482108997 0.5415584
ILMN_1814316 4.63223475651544 0.07272727
ILMN_2359168 4.29736538941948 0.7584416
ILMN_1731507 4.2631368114445 0.7896104
ILMN_1787689 4.37667335076317 0.548052
ILMN_3241953 6.64360009750009 0
ILMN_1745607 11.8525279736998 0
ILMN_2136495 4.25171333780135 0.761039
ILMN_1668111 4.78802988491334 0.01168831
ILMN_2295559 4.29889587909432 0.8324676
ILMN_1735045 8.22127754516193 0
ILMN_1680754 4.58883444685518 0.3753247

Total number of rows: 47230

Table truncated, full table size 1124 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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