|
| Status |
Public on Oct 12, 2023 |
| Title |
CK_srna_seq |
| Sample type |
SRA |
| |
|
| Source name |
spikelets at booting stage (Feeke 10)
|
| Organism |
Triticum aestivum |
| Characteristics |
cultivar: Fielder
tissue: spikelets at booting stage (Feeke 10)
genotype: WT
|
| Extracted molecule |
total RNA |
| Extraction protocol |
The spikelets at booting stage (Feeke 10) were harvested and frozen in liquid nitrogen for RNA isolation. 4 μg total RNA was used to prepare each sequencing sample.
Libraries were constructed and sequenced by Novogene (Beijing, China) to generate 50-bp single-end reads.
|
| |
|
| Library strategy |
ncRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
The reads were trimmed with cutadapt to remove Illumina adapters and low-quality bases (quality score < 30). Shortstack was utilized to map the 21-nt and 24-nt clean reads.
Assembly: IWGSC RefSeq v1.0
Supplementary files format and content: bw files of normalized 21nt and 24nt smRNA signals for each sRNA-seq data to display the smRNA distribution along the chromosomes
|
| |
|
| Submission date |
Jun 16, 2023 |
| Last update date |
Oct 12, 2023 |
| Contact name |
yijing zhang |
| E-mail(s) |
zhangyijing@fudan.edu.cn
|
| Organization name |
Fudan University
|
| Department |
Biochemistry
|
| Lab |
Functional Epigenomics Group
|
| Street address |
2005 Songhu Road
|
| City |
shanghai |
| ZIP/Postal code |
200438 |
| Country |
China |
| |
|
| Platform ID |
GPL25409 |
| Series (1) |
| GSE198284 |
Subgenome-specific usage of transposable element-derived promoters and enhancers in bread wheat development |
|
| Relations |
| BioSample |
SAMN35778539 |
| SRA |
SRX20710966 |
