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| Status |
Public on Jul 05, 2023 |
| Title |
JO, Female, ZT16, Rep3 |
| Sample type |
SRA |
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| Source name |
JO
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| Organism |
Anopheles gambiae |
| Characteristics |
tissue: JO
genotype: Kisumu
treatment: ZT16
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted (Quiagen) and its integrity was confirmed using Agilent’s 2200 Tapestation.
RNA libraries for RNA-seq were prepared using the SMART-Seq v4 Ultra Low Input RNA Kit (Clontech Laboratories, Inc.) following manufacturer's protocols.
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Description |
ZT16_F_JO_65
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| Data processing |
Read counts were quantified using Kallisto.
Assembly: VectorBase-53_AgambiaePEST_AnnotatedTranscripts.fasta
Supplementary files format and content: tab-delimited tsv file (raw_counts.tsv) includes Kallisto-estimated raw counts for each Sample.
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| Submission date |
Jun 20, 2023 |
| Last update date |
Jul 05, 2023 |
| Contact name |
Marta Andrés |
| E-mail(s) |
marta.andres@ucl.ac.uk
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| Organization name |
University College London
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| Department |
Ear Institute
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| Lab |
Andrés lab
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| Street address |
332 Grays Inn Rd
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| City |
London |
| ZIP/Postal code |
WC1X 8EE |
| Country |
United Kingdom |
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| Platform ID |
GPL22033 |
| Series (1) |
| GSE235286 |
Hearing of malaria mosquitoes is modulated by a beta-adrenergic-like octopamine receptor and serves as insecticide target |
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| Relations |
| BioSample |
SAMN35814654 |
| SRA |
SRX20734957 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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