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Sample GSM751 Query DataSets for GSM751
Status Public on Nov 28, 2001
Title SAGE_SciencePark_MCF7_control_3h
Sample type SAGE
Anchor NlaIII
Tag Count 5922
Tag Length 10
Source name Breast Carcinoma - Pleaural effusion
Organism Homo sapiens
Extracted molecule total RNA
Description MCF7 cells were grown in conditions devoid of estrogen for 48h - (IMEM media supplemented w/ 10% Charcoal Stripped Serum) at time 0h cells were treated with 10-8 M estradiol (E2) or vehicle - This SAGE library represents the 3h time-point of vehicle treatment
Sex: Female
Organ: Breast
Cell_type: epithelial
Cell_line: MCF7
Lab host: Top10 bacteria
Vector: pZero
Vector type: plasmid
R. Site 1: NlaIII
R. Site 2: BsmF1 as tagging enzyme
Sequences generated to date: 235

This library represents a Cancer Genome Anatomy Project library, which was either produced through CGAP funding, or donated to CGAP.
The Cancer Genome Anatomy Project (CGAP: is an interdisciplinary program established and administered by the National Cancer Institute (NCI: to generate the information and technological tools needed to decipher the molecular anatomy of the cancer cell.
Keywords = mammary gland
Keywords = carcinoma
Keywords = cell line
Keywords = EST
Submission date Nov 28, 2001
Last update date May 28, 2005
Contact name C Marcelo Aldaz
Phone 512-237-9530
Organization name M.D. Anderson Cancer Center
Department Science Park Research Division, Carcinogenesis
Street address
City Smithville
State/province TX
ZIP/Postal code 78957
Country USA
Platform ID GPL4
Series (1)
GSE41 Effects of estrogen

Data table header descriptions
TAG Ten base SAGE tag,
COUNT Absolute tag count
TPM Tags per million, or (1000000*COUNT)/(Total tags)

Data table
CCTCCAGCTA 80 13508.9
TTGGTCCTCT 59 9962.85
ACTTTTTCAA 58 9793.99
CCAGAACAGA 53 8949.68
AAGGAGATGG 39 6585.61
CTGGGTTAAT 39 6585.61
CAAATGAGGA 37 6247.89
AAGGTGGAGG 35 5910.17
AAGACAGTGG 34 5741.3
CCCGTCCGGA 33 5572.44
AAAAAAAAAA 32 5403.58
CTAAGACTTC 31 5234.72
TGGTGTTGAG 31 5234.72
CTCATAAGGA 30 5065.86
TGTGTTGAGA 30 5065.86
AGCACCTCCA 26 4390.41
CAAACCATCC 26 4390.41
CACAAACGGT 26 4390.41
GCATAATAGG 26 4390.41
TTCAATAAAA 25 4221.55

Total number of rows: 3260

Table truncated, full table size 66 Kbytes.

Supplementary data files not provided

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