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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 01, 2024 |
| Title |
P0jerboa_foot_3 |
| Sample type |
SRA |
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| Source name |
hindfoot muscle
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| Organism |
Jaculus jaculus |
| Characteristics |
tissue: hindfoot muscle
age: P0
treatment: normal
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| Extracted molecule |
total RNA |
| Extraction protocol |
NOT PROVIDED
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
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| Description |
trimmed fastq files
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| Data processing |
Sequenced were trimmed for low quality sequence
trimmed sequence were mapped as described in the method section
normalized readcount were extracted for further differential gene expression analysis
Assembly: custom
Supplementary files format and content: tab-delimited read-count output of STAR
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| Submission date |
Jun 27, 2023 |
| Last update date |
Sep 01, 2024 |
| Contact name |
Mai Tran |
| E-mail(s) |
maiptran8@gmail.com
|
| Organization name |
University of Utah
|
| Lab |
James Gagnon
|
| Street address |
201 President Circle
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| City |
Salt Lake City |
| State/province |
UT |
| ZIP/Postal code |
84112 |
| Country |
USA |
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| Platform ID |
GPL33135 |
| Series (1) |
| GSE235932 |
Gene expression differences associated with intrinsic hindfoot muscle loss in the jerboa, Jaculus jaculus |
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| Relations |
| BioSample |
SAMN36001920 |
| SRA |
SRX20793659 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM7512121_JH3_SR50.txt.gz |
112.4 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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