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Sample GSM753566 Query DataSets for GSM753566
Status Public on Jul 27, 2011
Title testis_piRNA
Sample type SRA
 
Source name pouch young testis
Organism Notamacropus eugenii
Characteristics age: 125 days
sample origin: pouch young testis
small rna classes: piRNA
Extracted molecule total RNA
Extraction protocol Hannon Protocol
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description size fractionated small RNA
Data processing custom pipeline to remove adapters and size select reads for the appropriate class
 
Submission date Jul 01, 2011
Last update date May 15, 2019
Contact name James R Lindsay
Organization name University of Connecticut
Department Molecular and Cell Biology
Lab O'Neill
Street address 354 Mansfield Road, Unit 2131
City Storrs
State/province CT
ZIP/Postal code 06269
Country USA
 
Platform ID GPL13812
Series (2)
GSE30370 Unique small RNA signatures uncovered in the tammar wallaby genome [small RNA_seq]
GSE30372 Analysis of the Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development.
Relations
SRA SRX081715
BioSample SAMN00631977

Data table header descriptions
SEQUENCE
COUNT

Data table
SEQUENCE COUNT
AAAAAAAAAAAAAAAAAAAAAAACAAAC 1
AAAAAAAACAAAAAAAAACCAAAAAAAA 1
AAAAAACCAAAAAAAAAAAACCCCCACA 1
AAAAAATAAAAAAAACAAAAAAAACCAT 1
AAAAAGACTCCAGAACTTTTGAGGGTGT 1
AAAAGACTCCGGAACTTTTGAGGGTATT 8
AAACACAAAAAACTCCACTAACTAATCC 1
AAACAGACTGTGGCAAGGAATTGTTGGT 1
AAACAGAGCAGGGATCGAGAGATGGTGT 1
AAAGACTCCAGAACTTTTGAGGGTGTTG 1
AAAGACTCCAGAACTTTTGAGGGTGTTT 1
AAAGACTCCGGAACTTTTGAGGGTATTG 1
AAAGAGAGGGAGCCAGTTTTACTCCGGG 1
AAAGATCCAGGTGGTTCTCTCTGGAAGT 1
AAAGGTCACGGAAGAGTGTCTATTGTGC 1
AAAGTTCTGGTTCTAGAGATGACTGTGT 1
AAATACTCTGAGGACTGTGTTCTTTGTA 1
AAATCTTTGGTCATACAGGAAGGATTGA 1
AAATGAAGAAGCTTGATTCACGAAGTCC 1
AAATTAGAGTGCCTGTAGGCACCATCAA 1

Total number of rows: 4131

Table truncated, full table size 125 Kbytes.




Supplementary file Size Download File type/resource
GSM753566_meu_pirna_testis_upper.fasta.gz 83.1 Kb (ftp)(http) FASTA
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data included within Sample table
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