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Sample GSM758339 Query DataSets for GSM758339
Status Public on Aug 03, 2011
Title px27_vs_px14
Sample type genomic
 
Channel 1
Source name Tissue sampled after natural death
Organism Pan troglodytes troglodytes
Characteristics sample type: px27 test sample
Growth protocol Tissue were maintained in -20C freezer before DNA extraction
Extracted molecule genomic DNA
Extraction protocol genomic DNA extracted by standard phenol chloroform extraction protocol
Label Cy5
Label protocol Performed by NimbleGen according to manufacturer's direction
 
Channel 2
Source name Tissue sampled after natural death
Organism Pan troglodytes
Characteristics sample type: Px14 reference sample
Growth protocol Tissue were maintained in -20C freezer before DNA extraction
Extracted molecule genomic DNA
Extraction protocol genomic DNA extracted by standard phenol chloroform extraction protocol
Label Cy3
Label protocol Performed by NimbleGen according to manufacturer's direction
 
 
Hybridization protocol Performed by NimbleGen according to manufacturer's direction
Scan protocol Performed by NimbleGen according to manufacturer's direction
Data processing Normalization was performed using NimbleScan 2.4.
 
Submission date Jul 11, 2011
Last update date Aug 03, 2011
Contact name Arcadi Navarro
E-mail(s) arcadi.navarro@upf.edu
Phone (+34)933160844
Organization name University Pompeu Fabra
Street address Plaça Charles Darwin, 1
City Barcelona
ZIP/Postal code 08003
Country Spain
 
Platform ID GPL7749
Series (1)
GSE30559 Great Ape Copy Number Variation

Data table header descriptions
ID_REF
VALUE Lowess normalized log2 Cy3/Cy5 ratios

Data table
ID_REF VALUE
CHR10FS010095100 0.398
CHR10FS010095500 -0.339
CHR10FS010096000 0.238
CHR10FS010096450 -0.032
CHR10FS010096850 -0.188
CHR10FS010097550 0.260
CHR10FS010097950 0.486
CHR10FS010098950 0.416
CHR10FS010099400 0.485
CHR10FS010099850 -0.553
CHR10FS010100250 -0.162
CHR10FS010100750 0.222
CHR10FS010101100 -0.311
CHR10FS010101550 -0.110
CHR10FS010102050 0.009
CHR10FS010102550 0.372
CHR10FS010102950 0.214
CHR10FS010103350 0.105
CHR10FS010103800 0.048
CHR10FS010104350 0.232

Total number of rows: 385027

Table truncated, full table size 8807 Kbytes.




Supplementary file Size Download File type/resource
GSM758339_7868802_532.pair.gz 6.1 Mb (ftp)(http) PAIR
GSM758339_7868802_635.pair.gz 6.1 Mb (ftp)(http) PAIR
GSM758339_7868802_normalized_segMNT.txt.gz 2.1 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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