|
Status |
Public on Mar 14, 2012 |
Title |
CD8 KO RNA-Seq |
Sample type |
SRA |
|
|
Source name |
KO CD4 cells
|
Organism |
Mus musculus |
Characteristics |
strain: C57BL/6 cell type: CD8+ T cell genotype: Rnasen deficient
|
Extracted molecule |
polyA RNA |
Extraction protocol |
PolyA RNAs were isolated and fragmented, then Ilumina compatible adaptors were ligated on.
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina Genome Analyzer II |
|
|
Data processing |
Alignment: Sequence reads were obtained and mapped to the mouse genome (mm9 assembly) using the Illumina Illumina ELAND software.
|
|
|
Submission date |
Jul 12, 2011 |
Last update date |
May 15, 2019 |
Contact name |
Mark Chong |
E-mail(s) |
mchong@svi.edu.au
|
Phone |
61-3-92313444
|
Organization name |
St Vincent's Institute of Medical Research
|
Street address |
9 Princes Street
|
City |
Fitzroy |
State/province |
Victoria |
ZIP/Postal code |
3065 |
Country |
Australia |
|
|
Platform ID |
GPL9250 |
Series (2) |
GSE30578 |
RNA mapping of Drosha deficient cells |
GSE30584 |
RNA mapping of Drosha deficient cells, chromatin maps of mature T cells, and miRNA profiling of lymphopoiesis |
|
Relations |
Reanalyzed by |
GSE80797 |
SRA |
SRX083246 |
BioSample |
SAMN00668285 |