|
Status |
Public on Mar 28, 2024 |
Title |
DLN-Tconv from B16OVA-bearing Ctrl mice |
Sample type |
SRA |
|
|
Source name |
Tumor draining lymph nodes
|
Organism |
Mus musculus |
Characteristics |
tissue: Tumor draining lymph nodes cell type: CD4+ T cells genotype: Ctrl
|
Extracted molecule |
polyA RNA |
Extraction protocol |
FACS sorted T cells were encapsulated using the Single Cell Controller (10x Genomics, Pleasanton, CA) N/A Chromium Single Cell 3′Library & Gel Bead v3.1 kit
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic single cell |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Description |
10x Genomics
|
Data processing |
The demultiplexing, barcoded processing and gene counting were made using the Cell Ranger v7.0.0. Assembly: mm10 Supplementary files format and content: Tab-separated values files and matrix files
|
|
|
Submission date |
Jul 31, 2023 |
Last update date |
Mar 28, 2024 |
Contact name |
Yenkel Grinberg-Bleyer |
E-mail(s) |
yenkel.grinberg-bleyer@lyon.unicancer.fr
|
Organization name |
Cancer Research Center of Lyon
|
Department |
Immunity, viruses and inflammation
|
Lab |
INSERM U1052
|
Street address |
28 rue Laennec
|
City |
Lyon |
ZIP/Postal code |
69008 |
Country |
France |
|
|
Platform ID |
GPL24247 |
Series (2) |
GSE239703 |
NF-κB transcription factors RelA and c-Rel selectively control CD4+ T-cell function in multiple sclerosis and cancer [sc_rna] |
GSE239704 |
NF-κB transcription factors RelA and c-Rel selectively control CD4+ T-cell function in multiple sclerosis and cancer |
|
Relations |
BioSample |
SAMN36773354 |
SRA |
SRX21200969 |