|
| Status |
Public on Mar 28, 2024 |
| Title |
DLN-Tconv from EAE-induced Ctrl mice |
| Sample type |
SRA |
| |
|
| Source name |
Central nervous system-draining lymph nodes
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Central nervous system-draining lymph nodes
cell type: CD4+ T cells
genotype: Ctrl
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
FACS sorted T cells were encapsulated using the Single Cell Controller (10x Genomics, Pleasanton, CA)
N/A
Chromium Single Cell 3′Library & Gel Bead v3.1 kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic single cell |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
10x Genomics
|
| Data processing |
The demultiplexing, barcoded processing and gene counting were made using the Cell Ranger v7.0.0.
Assembly: mm10
Supplementary files format and content: Tab-separated values files and matrix files
|
| |
|
| Submission date |
Jul 31, 2023 |
| Last update date |
Mar 28, 2024 |
| Contact name |
Yenkel Grinberg-Bleyer |
| E-mail(s) |
yenkel.grinberg-bleyer@lyon.unicancer.fr
|
| Organization name |
Cancer Research Center of Lyon
|
| Department |
Immunity, viruses and inflammation
|
| Lab |
INSERM U1052
|
| Street address |
28 rue Laennec
|
| City |
Lyon |
| ZIP/Postal code |
69008 |
| Country |
France |
| |
|
| Platform ID |
GPL24247 |
| Series (2) |
| GSE239703 |
NF-κB transcription factors RelA and c-Rel selectively control CD4+ T-cell function in multiple sclerosis and cancer [sc_rna] |
| GSE239704 |
NF-κB transcription factors RelA and c-Rel selectively control CD4+ T-cell function in multiple sclerosis and cancer |
|
| Relations |
| BioSample |
SAMN36773350 |
| SRA |
SRX21200973 |
