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Sample GSM7675779 Query DataSets for GSM7675779
Status Public on Oct 02, 2023
Title Case 10
Sample type RNA
Source name human plasma
Organism Homo sapiens
Characteristics diagnosis: Metabolic syndrome
gender: Female
tissue: Plasma
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from 1 mL plasma using Trizol reagent following the manufacturer’s instructions
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
Hybridization protocol FlashTag Biotin HSR RNA labeling kit
Scan protocol Microarrays were scanned using the Affymetrix GeneChip Command Console.
Description Small RNA expression data in human plasma
PlasmaMiRNA MetSyndrome
Data processing Data were analyzed in the R/Bioconductor environment with the software Oligo, pd.mirna.3.0 and Linear Models for Microarray Analysis (LIMMA).
Submission date Aug 02, 2023
Last update date Oct 02, 2023
Contact name M Elizabeth Tejero
Phone +525513912583
Organization name Instituto Nacional de Medicina Genomica, Mexico City
Street address Periferico sur 4809
City Tlalpan
State/province Ciudad de México
ZIP/Postal code 14160
Country Mexico
Platform ID GPL16384
Series (1)
GSE239866 MicroRNAs in plasma in metabolic syndrome.

Data table header descriptions
VALUE Log2 RMA Signal

Data table
14q0_st 1.316355
14qI-1_st 2.32437
14qI-1_x_st 1.573627
14qI-2_st 1.337024
14qI-3_x_st 1.093982
14qI-4_st 1.160252
14qI-4_x_st 1.478901
14qI-5_st 1.307924
14qI-6_st 0.9962472
14qI-6_x_st 1.115785
14qI-7_st 1.098809
14qI-8_st 1.314471
14qI-8_x_st 1.806893
14qI-9_x_st 1.494665
14qII-10_st 1.325645
14qII-10_x_st 1.410805
14qII-11_st 1.090137
14qII-11_x_st 1.087998
14qII-12_st 1.006947
14qII-12_x_st 1.00006

Total number of rows: 17870

Table truncated, full table size 451 Kbytes.

Supplementary file Size Download File type/resource
GSM7675779_10A.CEL.gz 701.1 Kb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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