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GEO accession:
Sample GSM768595
Query DataSets for GSM768595
Status
Public on Aug 15, 2011
Title
oral_moderatedysplasia_1028
Sample type
SAGE
Anchor
NlaIII
Tag Count
170479
Tag Length
10
Source name
oral biopsy, right lateral tongue
Organism
Homo sapiens
Characteristics
tissue: right lateral tongue
dysplasia: moderate
gender: female
age: 77
smoking status: never smoker
Extracted molecule
total RNA
Extraction protocol
RNA was isolated by guanidium isothiocyanate and phenol/chloroform extraction.
Data processing
Raw SAGE tags, excluding linker and ditags.
Submission date
Jul 28, 2011
Last update date
Aug 15, 2011
Contact name
Ewan Gibb
E-mail(s)
egibb@bccrc.ca
Organization name
BC Cancer Agency Research Centre
Street address
675 West 10th Ave
City
Vancouver
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE31021
Profiling long non-coding RNA expression in oral premalignant lesions.
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
1287
7549.32
AAAAAAAAAC
4
23.46
AAAAAAAAAG
7
41.06
AAAAAAAAAT
5
29.33
AAAAAAAACA
3
17.60
AAAAAAAACC
1
5.87
AAAAAAAAGA
10
58.66
AAAAAAAAGC
2
11.73
AAAAAAAAGG
1
5.87
AAAAAAACAC
1
5.87
AAAAAAACCC
1
5.87
AAAAAAACTA
2
11.73
AAAAAAAGAA
2
11.73
AAAAAAAGCA
2
11.73
AAAAAAAGGG
1
5.87
AAAAAAAGTA
1
5.87
AAAAAAATAA
1
5.87
AAAAAAATCA
9
52.79
AAAAAAATGC
2
11.73
AAAAAAATGT
5
29.33
Total number of rows:
34754
Table truncated, full table size
626 Kbytes
.
Supplementary data files not provided
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