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GEO accession:
Sample GSM768597
Query DataSets for GSM768597
Status
Public on Aug 15, 2011
Title
oral_moderatedysplasia2_1028
Sample type
SAGE
Anchor
NlaIII
Tag Count
158672
Tag Length
10
Source name
oral biopsy, right lateral tongue
Organism
Homo sapiens
Characteristics
tissue: right lateral tongue
dysplasia: moderate
gender: female
age: 77
smoking status: never smoker
Extracted molecule
total RNA
Extraction protocol
RNA was isolated by guanidium isothiocyanate and phenol/chloroform extraction.
Data processing
Raw SAGE tags, excluding linker and ditags.
Submission date
Jul 28, 2011
Last update date
Aug 15, 2011
Contact name
Ewan Gibb
E-mail(s)
egibb@bccrc.ca
Organization name
BC Cancer Agency Research Centre
Street address
675 West 10th Ave
City
Vancouver
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE31021
Profiling long non-coding RNA expression in oral premalignant lesions.
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
776
4890.59
AAAAAAAAAC
3
18.91
AAAAAAAAAG
4
25.21
AAAAAAAAAT
2
12.60
AAAAAAAACA
1
6.30
AAAAAAAAGA
8
50.42
AAAAAAAATA
2
12.60
AAAAAAACAA
3
18.91
AAAAAAACCA
1
6.30
AAAAAAACTG
1
6.30
AAAAAAACTT
1
6.30
AAAAAAAGAA
1
6.30
AAAAAAAGAT
1
6.30
AAAAAAAGGA
1
6.30
AAAAAAAGGC
1
6.30
AAAAAAATAA
5
31.51
AAAAAAATCA
11
69.33
AAAAAAATGT
4
25.21
AAAAAAATTG
1
6.30
AAAAAACAAA
1
6.30
Total number of rows:
33351
Table truncated, full table size
600 Kbytes
.
Supplementary data files not provided
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