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GEO accession:
Sample GSM768602
Query DataSets for GSM768602
Status
Public on Aug 15, 2011
Title
oral_moderatedysplasia_1404
Sample type
SAGE
Anchor
NlaIII
Tag Count
155421
Tag Length
10
Source name
oral biopsy, right ventral tongue
Organism
Homo sapiens
Characteristics
tissue: right ventral tongue
dysplasia: moderate
gender: male
age: 76
smoking status: former smoker
Extracted molecule
total RNA
Extraction protocol
RNA was isolated by guanidium isothiocyanate and phenol/chloroform extraction.
Data processing
Raw SAGE tags, excluding linker and ditags.
Submission date
Jul 28, 2011
Last update date
Aug 15, 2011
Contact name
Ewan Gibb
E-mail(s)
egibb@bccrc.ca
Organization name
BC Cancer Agency Research Centre
Street address
675 West 10th Ave
City
Vancouver
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE31021
Profiling long non-coding RNA expression in oral premalignant lesions.
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
949
6106.00
AAAAAAAAAC
4
25.74
AAAAAAAAAG
10
64.34
AAAAAAAAAT
8
51.47
AAAAAAAACA
1
6.43
AAAAAAAAGA
13
83.64
AAAAAAAAGG
3
19.30
AAAAAAAATG
1
6.43
AAAAAAACAA
1
6.43
AAAAAAACCC
2
12.87
AAAAAAAGAA
2
12.87
AAAAAAAGCA
2
12.87
AAAAAAAGCC
1
6.43
AAAAAAATAA
1
6.43
AAAAAAATCA
4
25.74
AAAAAAATGA
1
6.43
AAAAAAATGC
2
12.87
AAAAAAATTT
1
6.43
AAAAAACAAT
1
6.43
AAAAAACAGA
1
6.43
Total number of rows:
35970
Table truncated, full table size
647 Kbytes
.
Supplementary data files not provided
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