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GEO accession:
Sample GSM768642
Query DataSets for GSM768642
Status
Public on Aug 15, 2011
Title
oral_moderatedysplasia_1427
Sample type
SAGE
Anchor
NlaIII
Tag Count
164593
Tag Length
10
Source name
oral biopsy, left lateral tongue
Organism
Homo sapiens
Characteristics
tissue: left ventral tongue
dysplasia: moderate
gender: female
age: 53
smoking status: never smoker
Extracted molecule
total RNA
Extraction protocol
RNA was isolated by guanidium isothiocyanate and phenol/chloroform extraction.
Data processing
Raw SAGE tags, excluding linker and ditags.
Submission date
Jul 28, 2011
Last update date
Aug 15, 2011
Contact name
Ewan Gibb
E-mail(s)
egibb@bccrc.ca
Organization name
BC Cancer Agency Research Centre
Street address
675 West 10th Ave
City
Vancouver
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE31021
Profiling long non-coding RNA expression in oral premalignant lesions.
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
943
5729.28
AAAAAAAAAC
5
30.38
AAAAAAAAAG
10
60.76
AAAAAAAAAT
3
18.23
AAAAAAAACA
1
6.08
AAAAAAAACT
1
6.08
AAAAAAAAGA
16
97.21
AAAAAAAAGC
1
6.08
AAAAAAAAGG
4
24.30
AAAAAAAATA
4
24.30
AAAAAAAATG
4
24.30
AAAAAAAATT
1
6.08
AAAAAAACAA
4
24.30
AAAAAAACCC
1
6.08
AAAAAAAGAA
6
36.45
AAAAAAAGAG
1
6.08
AAAAAAAGCA
1
6.08
AAAAAAAGCT
2
12.15
AAAAAAAGTA
1
6.08
AAAAAAAGTG
1
6.08
Total number of rows:
40585
Table truncated, full table size
729 Kbytes
.
Supplementary data files not provided
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