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Sample GSM769066 Query DataSets for GSM769066
Status Public on Oct 19, 2011
Title F4 +/+ (from +/+) #5
Sample type RNA
 
Source name whole worm L3 lysates
Organism Caenorhabditis elegans
Characteristics genotype/variation: +/+ (from +/+)
generation: F4
day of birth: day2
Treatment protocol Worms were washed several times with M9 buffer prior to extraction
Growth protocol Worms were grown at 20 degrees
Extracted molecule total RNA
Extraction protocol RNAqueous kit (Ambion) was used
Label biotin
Label protocol Labeling was performed at the Stanford Protein and Nucleic Acid facility using biotin
 
Hybridization protocol Affymetrix protocol was followed by Stanford Protein and Nucleic Acid facility
Scan protocol Again scanning was performed according to affymetrix protocol by Stanford Protein and Nucleic Acid facility
Description F4 +/+ (from +/+) #5
Data processing Background adjustment and normalization was performed with RMA (Robust Multiarray Analysis) in R
 
Submission date Jul 29, 2011
Last update date Oct 19, 2011
Contact name Eric Lieberman Greer
E-mail(s) eric.greer@childrens.harvard.edu
Organization name Stanford University
Department Genetics
Lab Anne Brunet
Street address Alway M314 300 Pasteur Drive
City Palo Alto
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL13995
Series (1)
GSE31043 Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans

Data table header descriptions
ID_REF
VALUE Signals presented are RMA-normalized and log2 transformed

Data table
ID_REF VALUE
NM_001025782_at 7.898708002
NM_001025783_at 7.898708002
NM_001025786_at 6.303630439
NM_001025787_at 7.254859675
NM_001025789_at 4.084447569
NM_001025790_at 4.084447569
NM_001025791_at 5.292388336
NM_001025792_at 5.590740313
NM_001025793_at 5.068062106
NM_001025794_at 4.080845063
NM_001025795_at 4.080845063
NM_001025801_at 8.273630544
NM_001025802_at 8.153520965
NM_001025804_at 4.496531238
NM_001025805_at 5.384538554
NM_001025806_at 4.496531238
NM_001025808_at 5.48709266
NM_001025809_at 5.48709266
NM_001025812_at 4.730104635
NM_001025813_at 4.89240779

Total number of rows: 20806

Table truncated, full table size 516 Kbytes.




Supplementary file Size Download File type/resource
GSM769066.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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