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| Status |
Public on Nov 22, 2023 |
| Title |
143B |
| Sample type |
genomic |
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| Source name |
ostosarcoma cell line
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| Organism |
Homo sapiens |
| Characteristics |
cell line: 143B
cell type: ostosarcoma cell line
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted using the Blood and Cell Culture DNA Midi Kit (Qiagen, Hilden, Germany)
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| Label |
biotin
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| Label protocol |
Samples were prepared and hybridized to the CytoScan HD Assay (Affymetrix, Santa Clara, CA, USA) according to Affymetrix specifications.
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| Hybridization protocol |
Samples were prepared and hybridized to the CytoScan HD Assay (Affymetrix, Santa Clara, CA, USA) according to Affymetrix specifications.
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| Scan protocol |
standard protocol
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| Data processing |
The data generated from the assay were normalized, copy number status calculated, and the data reviewed for quality using the Chromosome Analysis Suite (ChAS) v3.0 (Thermo Fisher Scientific, Waltham, MA).
The resulting cychp files are generated by the Affymetrix Chromosome Analysis Suite (ChAS) v3.0
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| Submission date |
Aug 10, 2023 |
| Last update date |
Nov 22, 2023 |
| Contact name |
Chia-Ho Cheng |
| E-mail(s) |
chia-ho.cheng@moffitt.org
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| Organization name |
Moffitt Cancer Center
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| Street address |
12902 USF Magnolia Drive
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| City |
Tampa |
| ZIP/Postal code |
33647 |
| Country |
USA |
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| Platform ID |
GPL16131 |
| Series (1) |
| GSE240546 |
Comparison of CNV in 6 ostosarcoma cell lines |
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| Supplementary file |
Size |
Download |
File type/resource |
| GSM7701520_143B_CytoScanHD_Array_.CEL.gz |
30.6 Mb |
(ftp)(http) |
CEL |
| GSM7701520_143B_CytoScanHD_Array_.cyhd.ND.cychp.gz |
95.8 Mb |
(ftp)(http) |
CYCHP |
| GSM7701520_143B_CytoScanHD_Array_.cyhd.cychp.gz |
95.8 Mb |
(ftp)(http) |
CYCHP |
| Processed data provided as supplementary file |
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