|
| Status |
Public on Jul 02, 2024 |
| Title |
CD71+/Ter119+ cells, WT/WT, rep1 |
| Sample type |
SRA |
| |
|
| Source name |
spleen
|
| Organism |
Mus musculus |
| Characteristics |
tissue: spleen
cell type: CD71+/TER119+ sorted erythoblasts
genotype: WT/WT
|
| Treatment protocol |
CD71+Ter119+ cells FACS sorted from spleen
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol
Swift Rapid RNA library kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
mouse_169
MommeD45-raw-counts.csv
MommeD45-processed-counts.csv
|
| Data processing |
Read were mapped to mm9 with hisat2
Gene features were counted with featureCounts
Differential testing was performed with Voom/limma
Assembly: mm9
Supplementary files format and content: tab-delimited text file with raw counts for each sample
Supplementary files format and content: tab-delimited text file with counts per million for each sample
|
| |
|
| Submission date |
Aug 10, 2023 |
| Last update date |
Jul 03, 2024 |
| Contact name |
Graham William Magor |
| E-mail(s) |
Graham.Magor@monash.edu
|
| Organization name |
ACBD
|
| Street address |
99 Commercial Rd
|
| City |
Melbourne |
| State/province |
Victoria |
| ZIP/Postal code |
3000 |
| Country |
Australia |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE240553 |
Missense mutations in linker-2 of KLF1 impair expression of membrane transporters and cytoskeletal proteins to cause hemolysis |
|
| Relations |
| BioSample |
SAMN36933115 |
| SRA |
SRX21326280 |
