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Status
Public on Apr 17, 2024
Title
Control Cerebellum E16.5_205659810062_R01C01
Sample type
genomic
Source name
cerebellum, FFPE punch
Organism
Mus musculus Characteristics
tissue: brain
Extracted molecule
genomic DNA
Extraction protocol
DNA isolation from FFPE tissue was performed using the Maxwell RSC DNA FFPE kit (Promega Corporation, WI, USA).
Label
Cy3, Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulfite conversion was performed with the EZ DNA Methylation kit (Zymo Research, CA, USA) before amplification, fragmentation, and hybridization to the Illumina Infinium Mouse Methylation BeadChip using standard Illumina protocol.
Scan protocol
Illumina iScan microarray scanner
Data processing
SeSAMe
Submission date
Aug 10, 2023
Last update date
Apr 17, 2024
Contact name
Ulrich Schüller
E-mail(s)
u.schueller@uke.de Organization name
University Medical Center Hamburg-Eppendorf
Lab
Research Institute Children's Cancer Center
Street address
Martinistraße 52
City
Hamburg
ZIP/Postal code
20251
Country
Germany
Platform ID
GPL30650 Series (1)
GSE240627 SMARCA4 loss and mutated β-catenin induce proliferative lesions in the murine embryonic cerebellum
Data table header descriptions ID_REF VALUE normalized beta values (SeSAMe)
Data table ID_REF VALUE cg48216374_TC11
0.813154537
cg48216569_TC11
0.786980029
cg48114705_BC11
0.052576958
cg34910148_TC11
0.751030475
cg48109634_BC11
0.036642975
rs32062798_TC21
0.045105549
cg47920249_BC21
0.072608846
cg47855973_BC11
0.089419198
cg47874390_TC11
0.081990491
cg48105338_BC11
0.013780069
cg47582187_BC21
0.074716055
cg47890898_BC11
0.982770184
cg47889241_TC21
0.100605859
cg47737568_BC11
0.053460322
cg48191299_BC11
0.260308641
cg48164072_TC11
0.024264151
cg48157924_BC21
0.119747785
cg47740813_BC21
0.097661006
cg47581231_BC11
0.031062065
cg48222923_TC11
0.895736478
297412 7905 Kbytes .Supplementary file Size Download File type/resource GSM7706476_205659810062_R01C01_Grn.idat.gz
2.5 Mb
(ftp) (http) IDAT
GSM7706476_205659810062_R01C01_Red.idat.gz
2.5 Mb
(ftp) (http) IDAT
Processed data included within Sample table
