|
| Status |
Public on Mar 24, 2024 |
| Title |
liver_CRxCR_F1_1, mRNA-seq |
| Sample type |
SRA |
| |
|
| Source name |
Liver
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Liver
generation: F1
genotype: WT
environment: CRxCR_F1
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Liver tissue was snap frozen and stored at −80°C until further processing. RNA was extracted from tissue using TRIzol extraction
Illumina stranded mRNA kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
NextSeq 1000 |
| |
|
| Description |
data_S1_RNAseq_read_cpm.xlsx
|
| Data processing |
Transcriptomic analysis was performed in the R statistical computing environment version 4.2 and RStudio version 2022.02.1 using a pipeline adopted from an open-source toolkit for RNA sequencing analysis (Berry et al. 2021).
Assembly: GRCm39cDNA
Supplementary files format and content: xlsx spreadsheet with one tab per tissue type/comparison
|
| |
|
| Submission date |
Aug 14, 2023 |
| Last update date |
Mar 24, 2024 |
| Contact name |
Natalie Alyce Trigg |
| E-mail(s) |
natalie.trigg@uon.edu.au
|
| Phone |
0249212043
|
| Organization name |
Children's Hospital of Philadelphia
|
| Lab |
Conine Lab
|
| Street address |
421 Curie Blvd
|
| City |
Philadelphia |
| State/province |
Pennsylvania |
| ZIP/Postal code |
19104 |
| Country |
USA |
| |
|
| Platform ID |
GPL32159 |
| Series (1) |
| GSE240797 |
The microbiota and T cells non-genetically modulate inherited phenotypes transgenerationally |
|
| Relations |
| BioSample |
SAMN36983465 |
| SRA |
SRX21361303 |
