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GEO accession:
Sample GSM77712
Query DataSets for GSM77712
Status
Public on Dec 31, 2005
Title
bNF low replicate 1
Sample type
RNA
Source name
Daphnia magna neonate
Organism
Daphnia magna
Characteristics
Wild type, female, neonate, whole body
Treatment protocol
Exposed to 0.5 mg/l of beta-naphthoflavone for 24 h.
Extracted molecule
total RNA
Extraction protocol
Approximately 10 neonates were lysed in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label
Cy3
Label protocol
Approximately 0.5ug of total RNA was processed to produce cRNA targets.
Scan protocol
standard GenePix procedures
Description
Wild type neonate (<24h)
Data processing
GeneSpring version7.2
Submission date
Oct 12, 2005
Last update date
Oct 13, 2005
Contact name
Hajime Watanabe
E-mail(s)
watanabe@nibb.ac.jp
Phone
81-564-59-5237
Fax
81-564-59-5236
Organization name
National Institutes of Natural Sciences
Department
Center for Integrative Bioscience
Street address
5-1, Higashiyama
City
Okazaki
State/province
Aichi
ZIP/Postal code
444-8787
Country
Japan
Platform ID
GPL2888
Series (1)
GSE3445
Daphnia magna DNA microarray for the evaluation of toxicity of environmental chemicals
Data table header descriptions
ID_REF
VALUE
GeneSpring-calculated Signal intensity
Data table
ID_REF
VALUE
111
43
112
135
113
3381
115
3
116
19
121
89
122
360
123
200
125
602
126
3362
131
3203
132
30
133
7
135
46
136
67
141
33
142
170
143
31
145
172
146
71
Total number of rows:
178
Table truncated, full table size
1 Kbytes
.
Supplementary data files not provided
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