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GEO accession:
Sample GSM77716
Query DataSets for GSM77716
Status
Public on Dec 31, 2005
Title
CuSO4 low replicate 2
Sample type
RNA
Source name
Daphnia magna neonate
Organism
Daphnia magna
Characteristics
Wild type, female, neonate, whole body
Treatment protocol
Exposed to 5 ug/l of copper sulphate for 24 h.
Extracted molecule
total RNA
Extraction protocol
Approximately 10 neonates were lysed in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label
Cy3
Label protocol
Approximately 0.5ug of total RNA was processed to produce cRNA targets.
Scan protocol
standard GenePix procedures
Description
Wild type neonate (<24h)
Data processing
GeneSpring version7.2
Submission date
Oct 12, 2005
Last update date
Oct 13, 2005
Contact name
Hajime Watanabe
E-mail(s)
watanabe@nibb.ac.jp
Phone
81-564-59-5237
Fax
81-564-59-5236
Organization name
National Institutes of Natural Sciences
Department
Center for Integrative Bioscience
Street address
5-1, Higashiyama
City
Okazaki
State/province
Aichi
ZIP/Postal code
444-8787
Country
Japan
Platform ID
GPL2888
Series (1)
GSE3445
Daphnia magna DNA microarray for the evaluation of toxicity of environmental chemicals
Data table header descriptions
ID_REF
VALUE
GeneSpring-calculated Signal intensity
Data table
ID_REF
VALUE
111
86
112
209
113
3431
115
13
116
29
121
153
122
341
123
345
125
554
126
8183
131
5135
132
64
133
11
135
56
136
85
141
31
142
247
143
69
145
167
146
139
Total number of rows:
178
Table truncated, full table size
1 Kbytes
.
Supplementary data files not provided
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