|
| Status |
Public on Jan 26, 2024 |
| Title |
SP-EPN 2 |
| Sample type |
genomic |
| |
|
| Source name |
Spinal ependymoma
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Spinal ependymoma (FFPE tissue)
array type: EPIC
material type: FFPE
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted from FFPE tissue using the ReliaPrep™ FFPE gDNA Miniprep System (Promega). About 100-500 ng DNA were used for bisulfite conversion by the EZ DNA Methylation Kit (Zymo Research). The DNA Clean & Concentrator-5 (Zymo Research) and the Infinium HD FFPE DNA Restore Kit (Illumina) were employed to clean and restore the converted DNA.
|
| Label |
Cy3 and Cy5
|
| Label protocol |
not provided
|
| |
|
| Hybridization protocol |
not provided
|
| Scan protocol |
not provided
|
| Description |
204339300069_R01C01
|
| Data processing |
Methylation data were processed using minfi and noob normalization. CpG sites associated with SNPs and sex chromosomes were excluded.
|
| |
|
| Submission date |
Sep 12, 2023 |
| Last update date |
Jan 26, 2024 |
| Contact name |
Karoline Hack |
| E-mail(s) |
hack@kinderkrebs-forschung.de
|
| Organization name |
University Medical Center Hamburg-Eppendorf
|
| Department |
Children's Cancer Center Hamburg
|
| Lab |
Schüller
|
| Street address |
Martinistraße 52
|
| City |
Hamburg |
| ZIP/Postal code |
20251 |
| Country |
Germany |
| |
|
| Platform ID |
GPL21145 |
| Series (2) |
| GSE242991 |
Transcriptomic and epigenetic dissection of spinal ependymoma (SP-EPN) identifies clinically relevant subtypes enriched for tumors with and without NF2 mutations [Methylation] |
| GSE242994 |
Transcriptomic and epigenetic dissection of spinal ependymoma (SP-EPN) identifies clinically relevant subtypes enriched for tumors with and without NF2 mutations |
|
