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Sample GSM7777018 Query DataSets for GSM7777018
Status Public on Sep 05, 2024
Title control_2_TCR
Sample type SRA
 
Source name PBMC
Organism Homo sapiens
Characteristics tissue: PBMC
diagnosis: healthy control
Extracted molecule total RNA
Extraction protocol Ficoll centrifugation to isolate PBMC. RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina HiSeq 2500
 
Data processing Raw sequencing data was processed using the 10x CellRanger pipeline, cellranger count to and cellranger vdj generate a UMI count matrix
Assembly: GRCh38
Supplementary files format and content: the UMI count matrixes which were generated by cellranger count and cellranger vdj are provided
Library strategy: scTCR-seq
 
Submission date Sep 12, 2023
Last update date Sep 05, 2024
Contact name Zhaohui Tang
Organization name Tongji Hospital
Department Division of Trauma & Surgical Critical Care, Department of Surgery
Street address no.1095 Jiefang Avenue
City Wuhan
State/province Hubei
ZIP/Postal code 430030
Country China
 
Platform ID GPL16791
Series (1)
GSE243002 Comprehensive Profiling of Peripheral Blood Mononuclear Cells Reveals Monocyte-CD8+ T cell-B cell Communication as Central Cell-cell Interaction and pathogenesis in IgA Vasculitis
Relations
BioSample SAMN37366465
SRA SRX21762467

Supplementary file Size Download File type/resource
GSM7777018_126_TCR_filtered_contig_annotations.csv.gz 492.0 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA

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