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Sample GSM7793651 Query DataSets for GSM7793651
Status Public on Jan 10, 2024
Title TB_9711_Pre-Plasma IgG
Sample type protein
 
Source name Pre-Plasma
Organism Macaca fascicularis
Characteristics infection states: Symptomatic uncontrolled Mtb infection/TB disease
Treatment protocol BALF (1:35) or plasma (1:100)
Growth protocol N/A
Extracted molecule protein
Extraction protocol Plasma was obtained from peripheral blood samples and the BAL procedure was performed as previously described via direct visualization of the airway and lavage of ~ 40 ml normal saline (0.9%). Animal protocols and procedures were approved by the University of Pittsburgh’s Institutional Animal Care and Use Committee before the collection of samples.
Label Alexa 647 Goat Anti-Human IgG
Label protocol Alexa 647 Goat Anti-Human IgG (Jackson ImmunoResearch Labs Cat# 109-605-008, RRID:AB_2337882
 
Hybridization protocol Slides with 16 arrays on each were blocked SuperBlock (Thermo Fisher Scientific), then incubated with BALF (1:35) or plasma (1:100) diluted in phosphate buffered saline with 5% skim milk and 0.2% tween 20 (PBST) for 16 hrs at 4°C. After washing with 5% skim milk and 0.2% tween 20 (PBST) (3 x 5 min), slides were incubated with Cy3 Goat Anti-Human Serum IgA (Jackson ImmunoResearch Labs Cat# 109-165-011, RRID:AB_2337721) and Alexa 647 Goat Anti-Human IgG (Jackson ImmunoResearch Labs Cat# 109-605-008, RRID:AB_2337882; diluted at 1:200 in 5% skim milk and 0.2% tween 20 (PBST)) for 2 hrs at 4°C
Scan protocol Slides were scanned at 635 nm and 535 nm with a Tecan PowerScanner, and images were quantified with the ArrayPro Analyzer Software (Media Cybernetics, Inc.).
Description IgG
Data processing Spots were considered reactive if the ratio of the median fluorescent intensity (MFI) of the gene was greater than 1.4 x the median of negative control genes
 
Submission date Sep 20, 2023
Last update date Jan 10, 2024
Contact name Jacqueline M. Achkar
E-mail(s) Jacqueline.achkar@einsteinmed.edu
Phone 7184302971
Organization name Albert Einstein College of Medicine
Street address 1300 Morris Park Ave
City Bronx
State/province NY
ZIP/Postal code 10461
Country USA
 
Platform ID GPL33775
Series (2)
GSE243661 Mucosal and systemic antigen-specific antibody responses correlate with protection against active tuberculosis in nonhuman primates (NAPPA IgG)
GSE243663 Mucosal and systemic antigen-specific antibody responses correlate with protection against active tuberculosis in nonhuman primates

Data table header descriptions
ID_REF
VALUE normalized (scaled) signal count data.

Data table
ID_REF VALUE
1 0.973512815
2 0.954776233
3 0.980922225
4 0.941594151
5 0.920129806
6 0.897859467
7 0.928767381
8 0.961086359
9 0.911346319
10 0.945053233
11 0.962121212
12 0.973512815
13 0.924465415
14 0.947672167
15 0.935601685
16 0.947672167
17 0.919258377
18 0.942455767
19 0.971781008
20 1.014344119

Total number of rows: 324

Table truncated, full table size 4 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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