|
Status |
Public on Sep 05, 2024 |
Title |
IgAV_3_BCR |
Sample type |
SRA |
|
|
Source name |
PBMC
|
Organism |
Homo sapiens |
Characteristics |
tissue: PBMC diagnosis: IgA vasculitis (IgAV) cell type: PBMC subject status: xiongzihan: IgAV in convalescence phase
|
Extracted molecule |
total RNA |
Extraction protocol |
Ficoll centrifugation to isolate PBMC. RNA libraries were prepared for sequencing using standard Illumina protocols
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic single cell |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2500 |
|
|
Data processing |
Raw sequencing data was processed using the 10x CellRanger pipeline, cellranger count to and cellranger vdj generate a UMI count matrix Assembly: GRCh38 Supplementary files format and content: the UMI count matrixes which were generated by cellranger count and cellranger vdj are provided
|
|
|
Submission date |
Sep 24, 2023 |
Last update date |
Sep 05, 2024 |
Contact name |
Zhaohui Tang |
Organization name |
Tongji Hospital
|
Department |
Division of Trauma & Surgical Critical Care, Department of Surgery
|
Street address |
no.1095 Jiefang Avenue
|
City |
Wuhan |
State/province |
Hubei |
ZIP/Postal code |
430030 |
Country |
China |
|
|
Platform ID |
GPL16791 |
Series (1) |
GSE243002 |
Comprehensive Profiling of Peripheral Blood Mononuclear Cells Reveals Monocyte-CD8+ T cell-B cell Communication as Central Cell-cell Interaction and pathogenesis in IgA Vasculitis |
|
Relations |
BioSample |
SAMN37526824 |
SRA |
SRX21871266 |