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Sample GSM7798533 Query DataSets for GSM7798533
Status Public on Sep 05, 2024
Title IgAV_3_BCR
Sample type SRA
 
Source name PBMC
Organism Homo sapiens
Characteristics tissue: PBMC
diagnosis: IgA vasculitis (IgAV)
cell type: PBMC
subject status: xiongzihan: IgAV in convalescence phase
Extracted molecule total RNA
Extraction protocol Ficoll centrifugation to isolate PBMC. RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic single cell
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Data processing Raw sequencing data was processed using the 10x CellRanger pipeline, cellranger count to and cellranger vdj generate a UMI count matrix
Assembly: GRCh38
Supplementary files format and content: the UMI count matrixes which were generated by cellranger count and cellranger vdj are provided
 
Submission date Sep 24, 2023
Last update date Sep 05, 2024
Contact name Zhaohui Tang
Organization name Tongji Hospital
Department Division of Trauma & Surgical Critical Care, Department of Surgery
Street address no.1095 Jiefang Avenue
City Wuhan
State/province Hubei
ZIP/Postal code 430030
Country China
 
Platform ID GPL16791
Series (1)
GSE243002 Comprehensive Profiling of Peripheral Blood Mononuclear Cells Reveals Monocyte-CD8+ T cell-B cell Communication as Central Cell-cell Interaction and pathogenesis in IgA Vasculitis
Relations
BioSample SAMN37526824
SRA SRX21871266

Supplementary file Size Download File type/resource
GSM7798533_xiongzihan_BCR_filtered_contig_annotations.csv.gz 350.8 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA

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