|
| Status |
Public on Oct 10, 2023 |
| Title |
Sample_2, PBMC, snATACseq |
| Sample type |
SRA |
| |
|
| Source name |
PBMC
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: PBMC
tissue: PBMC
number of_donors: 1
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Frozen PBMC
snRNA-seq
snATAC-seq
|
| |
|
| Library strategy |
ATAC-seq |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
male
10x Genomics
|
| Data processing |
The demultiplexing, barcoded processing, gene counting and aggregation were made using Cell Ranger software cellranger-arc-2.0.0 for all samples (cellranger-arc-2.0.1 for Sample_0) (https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/pipelines/latest/what-is-cell-ranger-arc
Assembly: hg38
Supplementary files format and content: Tab-separated values files and matrix files
|
| |
|
| Submission date |
Oct 06, 2023 |
| Last update date |
Oct 11, 2023 |
| Contact name |
Greg Gibson |
| E-mail(s) |
greg.gibson@biology.gatech.edu
|
| Organization name |
Georgia Institute of Technology
|
| Street address |
North Ave NW
|
| City |
Atlanta |
| State/province |
GA |
| ZIP/Postal code |
30332 |
| Country |
USA |
| |
|
| Platform ID |
GPL18573 |
| Series (1) |
| GSE244831 |
Concordant B and T Cell Heterogeneity Inferred from the Multiomic Landscape of Peripheral Blood Mononuclear Cells in a Crohn's Disease Cohort |
|
| Relations |
| BioSample |
SAMN37710767 |
| SRA |
SRX22020866 |
