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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 10, 2023 |
| Title |
Pool_5, PBMC, snATACseq |
| Sample type |
SRA |
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| Source name |
PBMC
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| Organism |
Homo sapiens |
| Characteristics |
cell type: PBMC
tissue: PBMC
number of_donors: 2
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Frozen PBMC
snRNA-seq
snATAC-seq
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| Library strategy |
ATAC-seq |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
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| Description |
1 male, 1 female
10x Genomics
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| Data processing |
The demultiplexing, barcoded processing, gene counting and aggregation were made using Cell Ranger software cellranger-arc-2.0.0 for all samples (cellranger-arc-2.0.1 for Sample_0) (https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/pipelines/latest/what-is-cell-ranger-arc
Assembly: hg38
Supplementary files format and content: Tab-separated values files and matrix files
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| Submission date |
Oct 06, 2023 |
| Last update date |
Oct 11, 2023 |
| Contact name |
Greg Gibson |
| E-mail(s) |
greg.gibson@biology.gatech.edu
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| Organization name |
Georgia Institute of Technology
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| Street address |
North Ave NW
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| City |
Atlanta |
| State/province |
GA |
| ZIP/Postal code |
30332 |
| Country |
USA |
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| Platform ID |
GPL24676 |
| Series (1) |
| GSE244831 |
Concordant B and T Cell Heterogeneity Inferred from the Multiomic Landscape of Peripheral Blood Mononuclear Cells in a Crohn's Disease Cohort |
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| Relations |
| BioSample |
SAMN37710763 |
| SRA |
SRX22020870 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM7830534_Pool_5_atac_fragments.tsv.gz |
2.3 Gb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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