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Sample GSM7898982 Query DataSets for GSM7898982
Status Public on Dec 13, 2023
Title WTctrl
Sample type SRA
 
Source name dorsal skin
Organism Mus musculus
Characteristics tissue: dorsal skin
Sex: male
condition: 8weeks, telogen
genotype: WT
strain: C57Bl/6
treatment: no-UVB
Treatment protocol mouse dorsal skin were irradiated with UVB for 3times, once per two days. Detailed procedures were provided in methods.
Extracted molecule total RNA
Extraction protocol Fresh collected tissue was digested and immune cells were enriched by CD45+ magnetic beads.
Single cell suspension were submitted to sequencing core of BRC at Cornell University for cell viability check and sequencing.
 
Library strategy RNA-Seq
Library source transcriptomic single cell
Library selection cDNA
Instrument model NextSeq 2000
 
Description 10x genomics, sample ID in multiplexed raw files is "166160_AAC55GWM5_4_WF2_11July22"
Data processing raw data were demultplexing, barcoding and gene count using Cellranger software
Assembly: mm10
Supplementary files format and content: matrix files, barcoding files and features files were provided following standard cellranger procedure.
 
Submission date Nov 14, 2023
Last update date Dec 13, 2023
Contact name Luye An
E-mail(s) la389@cornell.edu
Organization name cornell university
Department biomedical sciences
Lab Andrew white lab
Street address 618 tower road
City ithaca
ZIP/Postal code 14850
Country USA
 
Platform ID GPL30172
Series (2)
GSE247694 Sexual dimorphism in melanocyte stem cell behavior reveals combinational therapeutic strategies for cutaneous repigmentation [scRNA-seq]
GSE247697 Sexual dimorphism in melanocyte stem cell behavior reveals combinational therapeutic strategies for cutaneous repigmentation
Relations
BioSample SAMN38248664
SRA SRX22520159

Supplementary file Size Download File type/resource
GSM7898982_WTctrl_barcodes.tsv.gz 30.6 Kb (ftp)(http) TSV
GSM7898982_WTctrl_features.tsv.gz 284.1 Kb (ftp)(http) TSV
GSM7898982_WTctrl_matrix.mtx.gz 37.4 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA

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