|
| Status |
Public on Dec 01, 2023 |
| Title |
H343 H3K27me3 |
| Sample type |
SRA |
| |
|
| Source name |
murine epidermis
|
| Organism |
Mus musculus |
| Characteristics |
cell type: murine epidermis
genotype: Krt14-Cre(-); LSL-H3K36M
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Mouse epidermis single cell suspension
Cell Signaling CUT&RUN kit (#86652S) followed by NEBNext Ultra library preparation
37bp paired-end reads
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
Aligned using bowtie2
Differential enrichment called via DiffBind with DESeq2 and SICER2
Assembly: Mus musculus GRCm38/mm10
Supplementary files format and content: DiffBind with DESeq2 and SICER2
|
| |
|
| Submission date |
Nov 16, 2023 |
| Last update date |
Dec 01, 2023 |
| Contact name |
Brian C. Capell |
| E-mail(s) |
briancapell@gmail.com
|
| Phone |
9178218826
|
| Organization name |
University of Pennsylvania
|
| Street address |
3400 Civic Center Blvd
|
| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19146 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE247991 |
Disruption of H3K36 methylation provokes cellular plasticity to drive aberrant glandular formation and squamous carcinogenesis (CUT&RUN) |
| GSE247995 |
Disruption of H3K36 methylation provokes cellular plasticity to drive aberrant glandular formation and squamous carcinogenesis |
|
| Relations |
| BioSample |
SAMN38283232 |
| SRA |
SRX22547897 |
