|
| Status |
Public on Dec 01, 2023 |
| Title |
H570 |
| Sample type |
SRA |
| |
|
| Source name |
tongue epithelia
|
| Organism |
Mus musculus |
| Characteristics |
cell type: tongue epithelia
genotype: Krt14-Cre(+); LSL-H3K36M
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
RNA was extracted using the RNeasy Mini Kit (QIAGEN)
RNA-seq NEBNext Poly(A) mRNA magnetic isolation module, followed by NEBNext Ultra Directional RNA library prep kit for Illumina
75bp single end reads
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
Aligned using RNA STAR under default settings
Differential expression analysis was performed via DESeq2
Assembly: Mus musculus GRCm38/mm10
Supplementary files format and content: DESeq2 output
|
| |
|
| Submission date |
Nov 16, 2023 |
| Last update date |
Dec 01, 2023 |
| Contact name |
Brian C. Capell |
| E-mail(s) |
briancapell@gmail.com
|
| Phone |
9178218826
|
| Organization name |
University of Pennsylvania
|
| Street address |
3400 Civic Center Blvd
|
| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19146 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE247992 |
Disruption of H3K36 methylation provokes cellular plasticity to drive aberrant glandular formation and squamous carcinogenesis (RNA-Seq) |
| GSE247995 |
Disruption of H3K36 methylation provokes cellular plasticity to drive aberrant glandular formation and squamous carcinogenesis |
|
| Relations |
| BioSample |
SAMN38285069 |
| SRA |
SRX22549571 |
