|
| Status |
Public on Sep 07, 2011 |
| Title |
CN-AML [4954590055_I] |
| Sample type |
RNA |
| |
|
| Source name |
Bone marrow
|
| Organism |
Homo sapiens |
| Characteristics |
age: 63,7
gender: F
tertile of methylation of pcg targets (0=low,1=intermediate, 2= high): 1
os 2 year: y
pfs 2 year: y
cr: y
|
| Treatment protocol |
Ficoll separated, snap frozen -80 pelleted cells
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Rneasy (Qiagen), Quality control with Agilent Bioanalyzer
|
| Label |
biotin
|
| Label protocol |
TotalPrep RNA Labeling Kit, Ambion
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
4954590055_I
|
| Data processing |
Quantile Normalization using Bead Studio
|
| |
|
| Submission date |
Sep 06, 2011 |
| Last update date |
Sep 07, 2011 |
| Contact name |
Stefan Deneberg |
| Phone |
+46858580000
|
| Organization name |
Karolinska Institutet
|
| Department |
Internal medicine/Huddinge
|
| Lab |
Hematology
|
| Street address |
M54
|
| City |
Stockholm |
| ZIP/Postal code |
14186 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL6947 |
| Series (2) |
| GSE31941 |
Prognostic DNA Methylation Patterns in Cytogenetically Normal Acute Myeloid Leukemia are predefined by Stem Cell Chromatin Marks [gene expression] |
| GSE32252 |
Prognostic DNA Methylation Patterns in CN-AML; a genome wide methylation and gene expression study |
|
