|
| Status |
Public on Dec 02, 2023 |
| Title |
WT anther stage10 biological replicate1 [WT10-1] |
| Sample type |
SRA |
| |
|
| Source name |
anther
|
| Organism |
Oryza sativa |
| Characteristics |
tissue: anther
Stage: 10
genotype: WT
treatment: untreated
|
| Treatment protocol |
untreated
|
| Growth protocol |
Rice plants were grown in the field during the rice growing season in Nanjing (N 32.02°, E 118.51°).
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Anthers on certain stages were picked with
RNA library was prepared with VAHTS Universal V6 RNA-seq Library Prep Kit for MGI
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
MGISEQ-2000RS |
| |
|
| Description |
WT10 biol rep1
|
| Data processing |
HISAT 2.2.0 was used for reads mapping (with default parameter).
featureCounts was used for count extraction and normalization.
Assembly: IRGSP-1.0/GCA_001433935.1
Supplementary files format and content: tab-delimited text file include FPKM values for each sample
|
| |
|
| Submission date |
Nov 23, 2023 |
| Last update date |
Dec 02, 2023 |
| Contact name |
Yuxing Fang |
| E-mail(s) |
fangyuxing@126.com
|
| Organization name |
Peking University
|
| Street address |
Peking University
|
| City |
Beijing |
| ZIP/Postal code |
100091 |
| Country |
China |
| |
|
| Platform ID |
GPL33951 |
| Series (1) |
| GSE248536 |
Rice transcriptional repressor OsTIE1 controls anther dehiscence and male sterility by regulating JA biosynthesis |
|
| Relations |
| BioSample |
SAMN38392818 |
| SRA |
SRX22630119 |
