|
| Status |
Public on Jun 20, 2024 |
| Title |
In_SPL10_input |
| Sample type |
SRA |
| |
|
| Source name |
leaf
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
tissue: leaf
ecotype: Col-0
treatment: InPut
|
| Extracted molecule |
protein |
| Extraction protocol |
Cells were fixed with 1% formaldehyde for 10 minutes. After quenching and cell lysis, chromatin was sonicated using a E220 focused-ultrasonicator (Covaris).
DAP-seq
|
| |
|
| Library strategy |
OTHER |
| Library source |
other |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
DAP-seq
|
| Data processing |
DAP-Seq reads (150-nucleotide paired-end sequences) were trimmed to remove the adapter sequences using cutadapt with default parameter
Assembly: TAIR 10
Supplementary files format and content: narrowPeak, log
Library strategy: DAP-seq
|
| |
|
| Submission date |
Dec 14, 2023 |
| Last update date |
Jun 20, 2024 |
| Contact name |
Xu Pengfei |
| E-mail(s) |
xpf2011@sina.com
|
| Organization name |
Shanghai Jiao Tong University
|
| Lab |
Yu Xiang Lab
|
| Street address |
800 Dongchuan RD. Minhang District, Shanghai, China
|
| City |
Shanghai |
| State/province |
Shanghai |
| ZIP/Postal code |
200240 |
| Country |
China |
| |
|
| Platform ID |
GPL13222 |
| Series (1) |
| GSE250168 |
The SBP transcription factor SPL10 regulates leaf curvature by promoting REVOLUTA transcription in plants |
|
| Relations |
| BioSample |
SAMN38836384 |
| SRA |
SRX22885339 |
