|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Jul 10, 2024 |
Title |
A.baumannii_control_Rep1 |
Sample type |
SRA |
|
|
Source name |
bacteria
|
Organism |
Acinetobacter baumannii A118 |
Characteristics |
cell type: bacteria treatment: TSB medium
|
Extracted molecule |
total RNA |
Extraction protocol |
peqGOLD Total RNA Kit, VWR Peqlab, Darmstadt, Germany llumina® Stranded Total RNA Prep Kit
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Data processing |
mapping: bowtie2 2.4.1, default parameters read trimming: trimmomatic 0.36, parameters: LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:39 differential gene expression analysis: R 3.6.3 and DESeq2 1.26, default parameters Assembly: ASM1467273v1, ASM1346v1 Supplementary files format and content: Table S2 RNAseq Ab in USA300 CFCM.xlsx; Excel Table, Differential Gene Expression data Supplementary files format and content: Table S3 Main RNAseq pathways Ab.xlsx; Excel Table, Differential Gene Expression data Supplementary files format and content: Table S4 RNAseq Sa in A118 CFCM.xlsx; Excel Table, Differential Gene Expression data Supplementary files format and content: Table S5 Main RNAseq pathways Sa.xlsx; Excel Table, Differential Gene Expression data Supplementary files format and content: ReadCounts_AbA118_in_CFCM_and_TSB.ods Supplementary files format and content: ReadCounts_SaUSA_in_CFCM_and_TSB.ods
|
|
|
Submission date |
Dec 14, 2023 |
Last update date |
Jul 10, 2024 |
Contact name |
Manuel Wittchen |
Organization name |
Bielefeld University
|
Department |
Center for Biotechnology
|
Street address |
Universitaetsstr. 27
|
City |
Bielefeld |
ZIP/Postal code |
33615 |
Country |
Germany |
|
|
Platform ID |
GPL34012 |
Series (1) |
GSE250252 |
Competitive Inhibition and Mutualistic Growth in Polymicrobial Infections: Deciphering Staphylococcus aureus – Acinetobacter baumannii Interaction Dynamics |
|
Relations |
BioSample |
SAMN38845131 |
SRA |
SRX22893308 |
Supplementary data files not provided |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
|
|
|
|
|