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Sample GSM7996687 Query DataSets for GSM7996687
Status Public on May 03, 2024
Title No treatment M 3
Sample type RNA
 
Source name lung tissue homogenate
Organism Mus musculus
Characteristics e-liquid exposure: no
nicotine %: 0
Sex: male
Treatment protocol Adult male and female C57BL/6J mice were exposed to electronic cigarettes with 0%, 3% and 6% nicotine daily (70 ml, 3.3s, 1 puff per min/30 min) for 14 days, using the inExpose full body chamber (SCIREQ). Following exposure, lung tissue was harvested and RNA extracted.
Growth protocol n/a
Extracted molecule total RNA
Extraction protocol Lung tissue was homogenized in Trizol. Total RNA was extracted with the Direct-zol (Zymo Research)
Label SYBR Green
Label protocol A total of 100 ng of purified RNA were retrotranscribed with the RT2 First Strand Kit (Qiagen). The expression of 84 NRs genes and coregulators was measured with the RT² ProfilerTM Array Mouse Receptors & Coregulators (PAMM-056YE)
 
Hybridization protocol n/a
Scan protocol n/a
Description male mouse not exposed (control)
Data processing Data were analyzed in excel using Ct values for each sample, normalized to the average Ct of 5 endogenous controls (Actb, B2m, Gapdh, Gusb, Hsp90ab1)
 
Submission date Dec 28, 2023
Last update date May 03, 2024
Contact name Patricia Silveyra
E-mail(s) psilveyr@iu.edu, ptrcslvr@gmail.com
Organization name Indiana University Bloomington
Department Environmental and Occupational Health
Lab Silveyra lab
Street address 2819 E 10th St
City Bloomington
State/province Indiana
ZIP/Postal code 47408
Country USA
 
Platform ID GPL34050
Series (1)
GSE252208 Nuclear receptor expression in lung tissue after vaping exposure

Data table header descriptions
ID_REF
VALUE For fold change calculations, ΔΔCt based fold-change values were obtained using sample 14 as control (2^-ΔΔCt, where -ΔΔCt = -[ΔCttest -ΔCtcontrol]).

Data table
ID_REF VALUE
A01 2.1646102
A02 5.2966932
A03 2.9980972
A04 3.6860752
A05 2.2986012
A06 3.9595402
A07 -0.6820568
A08 7.9756762
A09 6.2412632
A10 5.1663212
A11 14.6938232
A12 9.2492622
B01 1.3788232
B02 0.3525322
B03 3.0490332
B04 3.4869602
B05 1.9161132
B06 4.8399632
B07 2.1679232
B08 14.6938232

Total number of rows: 96

Table truncated, full table size 1 Kbytes.




Supplementary data files not provided

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