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Sample GSM7996688 Query DataSets for GSM7996688
Status Public on May 03, 2024
Title E-cig M 0% 1
Sample type RNA
 
Source name lung tissue homogenate
Organism Mus musculus
Characteristics e-liquid exposure: yes
nicotine %: 0
Sex: male
Treatment protocol Adult male and female C57BL/6J mice were exposed to electronic cigarettes with 0%, 3% and 6% nicotine daily (70 ml, 3.3s, 1 puff per min/30 min) for 14 days, using the inExpose full body chamber (SCIREQ). Following exposure, lung tissue was harvested and RNA extracted.
Growth protocol n/a
Extracted molecule total RNA
Extraction protocol Lung tissue was homogenized in Trizol. Total RNA was extracted with the Direct-zol (Zymo Research)
Label SYBR Green
Label protocol A total of 100 ng of purified RNA were retrotranscribed with the RT2 First Strand Kit (Qiagen). The expression of 84 NRs genes and coregulators was measured with the RT² ProfilerTM Array Mouse Receptors & Coregulators (PAMM-056YE)
 
Hybridization protocol n/a
Scan protocol n/a
Description male mouse exposed to vape (50%VG/50%PG) with 0% nitcotine
Data processing Data were analyzed in excel using Ct values for each sample, normalized to the average Ct of 5 endogenous controls (Actb, B2m, Gapdh, Gusb, Hsp90ab1)
 
Submission date Dec 28, 2023
Last update date May 03, 2024
Contact name Patricia Silveyra
E-mail(s) psilveyr@iu.edu, ptrcslvr@gmail.com
Organization name Indiana University Bloomington
Department Environmental and Occupational Health
Lab Silveyra lab
Street address 2819 E 10th St
City Bloomington
State/province Indiana
ZIP/Postal code 47408
Country USA
 
Platform ID GPL34050
Series (1)
GSE252208 Nuclear receptor expression in lung tissue after vaping exposure

Data table header descriptions
ID_REF
VALUE For fold change calculations, ΔΔCt based fold-change values were obtained using sample 14 as control (2^-ΔΔCt, where -ΔΔCt = -[ΔCttest -ΔCtcontrol]).

Data table
ID_REF VALUE
A01 2.1340736
A02 4.8832856
A03 3.3001906
A04 4.1221736
A05 3.8292986
A06 5.7271986
A07 -0.1286194
A08 9.5519586
A09 7.2174556
A10 3.4416736
A11 9.5519586
A12 6.4653226
B01 1.3419466
B02 0.1747136
B03 2.0472336
B04 2.3418146
B05 0.9416206
B06 3.7154646
B07 3.9215206
B08 9.5519586

Total number of rows: 96

Table truncated, full table size 1 Kbytes.




Supplementary data files not provided

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