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Sample GSM7996696 Query DataSets for GSM7996696
Status Public on May 03, 2024
Title E-cig M 6% 2
Sample type RNA
 
Source name lung tissue homogenate
Organism Mus musculus
Characteristics e-liquid exposure: yes
nicotine %: 6
Sex: male
Treatment protocol Adult male and female C57BL/6J mice were exposed to electronic cigarettes with 0%, 3% and 6% nicotine daily (70 ml, 3.3s, 1 puff per min/30 min) for 14 days, using the inExpose full body chamber (SCIREQ). Following exposure, lung tissue was harvested and RNA extracted.
Growth protocol n/a
Extracted molecule total RNA
Extraction protocol Lung tissue was homogenized in Trizol. Total RNA was extracted with the Direct-zol (Zymo Research)
Label SYBR Green
Label protocol A total of 100 ng of purified RNA were retrotranscribed with the RT2 First Strand Kit (Qiagen). The expression of 84 NRs genes and coregulators was measured with the RT² ProfilerTM Array Mouse Receptors & Coregulators (PAMM-056YE)
 
Hybridization protocol n/a
Scan protocol n/a
Description male mouse exposed to vape (50%VG/50%PG) with 6% nitcotine
Data processing Data were analyzed in excel using Ct values for each sample, normalized to the average Ct of 5 endogenous controls (Actb, B2m, Gapdh, Gusb, Hsp90ab1)
 
Submission date Dec 28, 2023
Last update date May 03, 2024
Contact name Patricia Silveyra
E-mail(s) psilveyr@iu.edu, ptrcslvr@gmail.com
Organization name Indiana University Bloomington
Department Environmental and Occupational Health
Lab Silveyra lab
Street address 2819 E 10th St
City Bloomington
State/province Indiana
ZIP/Postal code 47408
Country USA
 
Platform ID GPL34050
Series (1)
GSE252208 Nuclear receptor expression in lung tissue after vaping exposure

Data table header descriptions
ID_REF
VALUE For fold change calculations, ΔΔCt based fold-change values were obtained using sample 14 as control (2^-ΔΔCt, where -ΔΔCt = -[ΔCttest -ΔCtcontrol]).

Data table
ID_REF VALUE
A01 3.0279468
A02 7.6789628
A03 3.9015448
A04 5.4972598
A05 4.1509518
A06 5.3647448
A07 1.1000138
A08 8.0954858
A09 12.5472778
A10 4.5666198
A11 12.5472778
A12 10.3132078
B01 1.3587998
B02 -0.0125592
B03 2.3981938
B04 3.2167728
B05 2.8962688
B06 4.8091508
B07 3.8072948
B08 12.5472778

Total number of rows: 96

Table truncated, full table size 1 Kbytes.




Supplementary data files not provided

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