GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM800

Query DataSets for GSM800

Status

Public on Feb 12, 2002

Title

CGH_Albertson_GM03134-001218

Sample type

genomic

Channel 1

Source name

Cell line GM03134

Organism

Homo sapiens

Characteristics

Coriell cell line repository identifier: GM03134
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM03134

Biomaterial provider

Coriell Cell Repositories
Coriell

Extracted molecule

genomic DNA

Channel 2

Source name

normal male reference genomic DNA

Organism

Homo sapiens

Biomaterial provider

Coriell

Extracted molecule

genomic DNA

Description

Coriell Cell Repositories cell line <a href="http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM03134">GM03134</a>.
Fibroblast cell line derived from a 3 month old male with multiple congenital anomalies.
Chromosomal abnormalities are present.
Karyotype is 46,XY,del(8)(pter>q13::q22>qter)

Submission date

Jan 17, 2002

Last update date

Nov 30, 2005

Contact name

Donna G Albertson

E-mail(s)

albertson@cc.ucsf.edu

Phone

415 502-8463

Organization name

University of California San Francisco

Department

Comprehensive Cancer Center

Street address

City

San Francisco

State/province

ZIP/Postal code

94143

Country

USA

Platform ID

GPL28

Series (1)

GSE16

Microarray-based CGH in human cancer cell lines

Data table header descriptions
ID_REF	Unique row identifier, genome position order
VALUE	aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO	Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV	Standard deviation of VALUE
NO_REPLICATES	Number of replicate spot measurements

Data table
ID_REF	VALUE	LINEAR_RATIO	LOG2STDDEV	NO_REPLICATES
1		0.950777	0.01481	3
2				0
3	0.02617	1.018305	0.003235	3
4	-0.017889	0.987677	0.009048	3
5	0.048327	1.034065	0.004443	3
6	0.059511	1.042112	0.001573	2
7	-0.035042	0.976004	0.00387	3
8	0.025053	1.017517	0.005049	3
9	-0.059712	0.959456	0.004498	3
10	-0.046926	0.967997	0.010519	3
11	0.157643	1.115463	0.15783	3
12				0
13	0.053069	1.037469	0.008728	3
14	0.035591	1.024976	0.00943	3
15	0.062206	1.044061	0.002775	3
16	-0.038047	0.973973	0.018445	3
17	0.093562	1.067001	0.017554	3
18	-0.005821	0.995974	0.005743	3
19	0.018855	1.013155	0.003026	3
20	0.019643	1.013709	0.012156	3

Total number of rows: 2463

Table truncated, full table size 76 Kbytes.

Supplementary data files not provided