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Sample GSM801 Query DataSets for GSM801
Status Public on Feb 12, 2002
Title CGH_Albertson_GM03563-010220
Sample type genomic
 
Channel 1
Source name Cell line GM03563
Organism Homo sapiens
Characteristics Coriell cell line repository identifier: GM03563
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM03563
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
 
Channel 2
Source name normal male reference genomic DNA
Organism Homo sapiens
Biomaterial provider Coriell
Extracted molecule genomic DNA
 
 
Description Coriell Cell Repositories cell line <a href="http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM03563">GM03563</a>.
Fibroblast cell line derived from a 1 month old male with multiple congenital anomalies.
Chromosomal abnormalities are present.
Karyotype is 46,XY,-9,+der(9)t(3;9)(9qter>9p24:: 3q12>3qter)mat
 
Submission date Jan 17, 2002
Last update date Nov 30, 2005
Contact name Donna G Albertson
E-mail(s) albertson@cc.ucsf.edu
Phone 415 502-8463
Organization name University of California San Francisco
Department Comprehensive Cancer Center
Street address
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL28
Series (1)
GSE16 Microarray-based CGH in human cancer cell lines

Data table header descriptions
ID_REF Unique row identifier, genome position order
VALUE aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV Standard deviation of VALUE
NO_REPLICATES Number of replicate spot measurements

Data table
ID_REF VALUE LINEAR_RATIO LOG2STDDEV NO_REPLICATES
1 0.992156 0.035733 3
2 0
3 0.045282 1.031885 0.003927 3
4 0.062873 1.044544 0.001982 2
5 0.086861 1.062057 0.012866 3
6 0.008131 1.005652 0.005518 3
7 0.079419 1.056593 0.007605 3
8 -0.073242 0.950499 0.012158 3
9 0.052829 1.037297 0.001883 3
10 0.009296 1.006464 0.004056 3
11 -0.047874 0.967361 0.002475 3
12 0.033011 1.023145 0.003387 3
13 0.080088 1.057082 0.001516 3
14 0.060172 1.04259 0.014863 3
15 0.054737 1.03867 0.00434 3
16 0.041872 1.029449 0.007446 3
17 0.093953 1.067291 0.00747 3
18 0.150665 1.110081 0.016087 3
19 0.017451 1.01217 0.010301 3
20 0.059603 1.042179 0.015396 2

Total number of rows: 2463

Table truncated, full table size 77 Kbytes.




Supplementary data files not provided
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