 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jan 18, 2024 |
| Title |
root, Cd, rep2 |
| Sample type |
SRA |
| |
|
| Source name |
root
|
| Organism |
Glycine max |
| Characteristics |
tissue: root
treatment: Cd
cell type: Soybean root cell
cultivar: Williams 82
|
| Treatment protocol |
Cd 70mg/L
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with TRIzol (thermofisher, 15596018), and the repository was constructed with illumina NovaseqTM 6000 (LC Bio Technology CO.,Ltd. Hangzhou,China).
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
Cd_2
|
| Data processing |
TheoriginalDatageneratedbysequencingneedtobepreprocessedandfiltered(seethedescriptionoftheanalysismethodforfilteringcriteria)toobtainvaliddata(CleanData),thencomparedwiththereferencegenome,andfinallycarriedoutgenequantitativeanalysis.
Assembly: gmx_Ensembl_v54
Supplementary files format and content: 1_genes_fpkm_expression.txt
|
| |
|
| Submission date |
Jan 10, 2024 |
| Last update date |
Jan 18, 2024 |
| Contact name |
Yang Shangjun |
| E-mail(s) |
ysj_1029@sina.com
|
| Organization name |
Northeast Agricultural University
|
| Street address |
Mucai Street
|
| City |
Harbin |
| ZIP/Postal code |
150006 |
| Country |
China |
| |
|
| Platform ID |
GPL28801 |
| Series (1) |
| GSE252910 |
OceanobacilluspicturaeAlleviatesCdstressandpromotesgrowthinsoybeanseedlings |
|
| Relations |
| BioSample |
SAMN39334584 |
| SRA |
SRX23153633 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
|
|
|
|
 |
