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Sample GSM803 Query DataSets for GSM803
Status Public on Feb 12, 2002
Title CGH_Albertson_GM04435-001218
Sample type genomic
 
Channel 1
Source name Cell line GM04435
Organism Homo sapiens
Characteristics Coriell cell line repository identifier: GM04435
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM04435
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
 
Channel 2
Source name normal male reference genomic DNA
Organism Homo sapiens
Biomaterial provider Coriell
Extracted molecule genomic DNA
 
 
Description Coriell Cell Repositories cell line <a href="http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM04435">GM04435</a>.
Fibroblast cell line derived from the amnion of a 19 gestational week male fetus.
Trisomies 16 and 21 are present.
Karyotype is 48,XY,+16,+21
 
Submission date Jan 17, 2002
Last update date Nov 30, 2005
Contact name Donna G Albertson
E-mail(s) albertson@cc.ucsf.edu
Phone 415 502-8463
Organization name University of California San Francisco
Department Comprehensive Cancer Center
Street address
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL28
Series (1)
GSE16 Microarray-based CGH in human cancer cell lines

Data table header descriptions
ID_REF Unique row identifier, genome position order
VALUE aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV Standard deviation of VALUE
NO_REPLICATES Number of replicate spot measurements

Data table
ID_REF VALUE LINEAR_RATIO LOG2STDDEV NO_REPLICATES
1 -0.08094 0.945441 0.00236 3
2 0
3 0.076643 1.054562 0.008784 3
4 0.058587 1.041445 0.008067 3
5 0.050933 1.035935 0.007249 3
6 0.008181 1.005686 0.002519 3
7 0.11868 1.085741 0.007152 3
8 0.05511 1.038938 0.003473 3
9 0.018911 1.013195 0.014094 3
10 -0.00212 0.998531 0.000896 2
11 -0.019931 0.98628 0.006894 3
12 0
13 0.062141 1.044014 0.000535 3
14 0.054858 1.038757 0.008552 3
15 0.097759 1.07011 0.001487 3
16 0.015196 1.010589 0.006581 3
17 0.134696 1.097862 0.036383 3
18 -0.03374 0.976885 0.007036 3
19 0.038223 1.026848 0.00575 3
20 0.019313 1.013477 0.01514 3

Total number of rows: 2463

Table truncated, full table size 76 Kbytes.




Supplementary data files not provided
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