|
Status |
Public on Feb 07, 2024 |
Title |
Placenta Ctrl 3 Capture |
Sample type |
SRA |
|
|
Source name |
Placenta
|
Organism |
Mus musculus |
Characteristics |
tissue: Placenta strain: C57/BL6 treatment: Saline
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted using QIAamp DNA Micro Kit (Qiagen) following manufacturer's recommendations Libraries were performed using SureSelectXT Methyl-Seq mouse Target Enrichment System (Agilent) following manufacturer's protocol
|
|
|
Library strategy |
Bisulfite-Seq |
Library source |
genomic |
Library selection |
RANDOM |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Data processing |
Sequence reads were trimmed using Trimmomatic (v0.36) Alignment and methylation counts were performed with Bismark (v0.18.1) Assembly: mm10 Supplementary files format and content: tab-delimited files including CpG sites coordinate, coverage, methylation values Supplementary files format and content: Input files for the methylKit package
|
|
|
Submission date |
Feb 01, 2024 |
Last update date |
Feb 07, 2024 |
Contact name |
Serge McGraw |
E-mail(s) |
Serge.mcgraw@umontreal.ca
|
Organization name |
CHU Ste-Justine Research Center/Université de Montréal
|
Lab |
McGraw Lab
|
Street address |
3175 Côte Sainte-Catherine, office 5.17.005
|
City |
Montreal |
State/province |
Qc |
ZIP/Postal code |
H3T 1C5 |
Country |
Canada |
|
|
Platform ID |
GPL24247 |
Series (2) |
GSE254845 |
Sex-Specific DNA Methylation and Gene Expression Changes in Mouse Placentas After Early Preimplantation Alcohol Exposure[Methyl-Seq] |
GSE254847 |
Sex-Specific DNA Methylation and Gene Expression Changes in Mouse Placentas After Early Preimplantation Alcohol Exposure |
|
Relations |
BioSample |
SAMN39732225 |
SRA |
SRX23502114 |