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Sample GSM807 Query DataSets for GSM807
Status Public on Feb 12, 2002
Title CGH_Albertson_GM10315-010117
Sample type genomic
 
Channel 1
Source name Cell line GM10315
Organism Homo sapiens
Characteristics Coriell cell line repository identifier: GM10315
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM10315
Biomaterial provider Coriell Cell Repositories
Coriell
Extracted molecule genomic DNA
 
Channel 2
Source name normal male reference genomic DNA
Organism Homo sapiens
Biomaterial provider Coriell
Extracted molecule genomic DNA
 
 
Description Coriell Cell Repositories cell line <a href="http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM10315">GM10315</a>.
Fibroblast cell line derived from a 12 gestational week female fetus.
Trisomy 22 is present.
Karyotype is 47,XX,+22 with 8% of cells show random chromosome loss.
 
Submission date Jan 17, 2002
Last update date Nov 30, 2005
Contact name Donna G Albertson
E-mail(s) albertson@cc.ucsf.edu
Phone 415 502-8463
Organization name University of California San Francisco
Department Comprehensive Cancer Center
Street address
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL28
Series (1)
GSE16 Microarray-based CGH in human cancer cell lines

Data table header descriptions
ID_REF Unique row identifier, genome position order
VALUE aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV Standard deviation of VALUE
NO_REPLICATES Number of replicate spot measurements

Data table
ID_REF VALUE LINEAR_RATIO LOG2STDDEV NO_REPLICATES
1 1.0468 0.037499 3
2 0
3 -0.035608 0.975621 0.016871 3
4 -0.049963 0.965961 0.017638 3
5 0.027962 1.019571 0.009259 3
6 -0.002575 0.998216 0.010519 3
7 0.004986 1.003462 0.012001 3
8 0.059098 1.041814 0.006106 3
9 -0.005518 0.996183 0.009267 3
10 -0.008648 0.994023 0.004293 3
11 -0.076854 0.948123 0.00435 3
12 0.043005 1.030258 0.007362 3
13 0.024873 1.01739 0.01874 3
14 0.111937 1.080678 0.047231 3
15 0.034172 1.023969 0.007709 2
16 -0.026394 0.981872 0.007543 3
17 0.108032 1.077757 0.008331 3
18 0.081607 1.058196 0.004431 3
19 0.058354 1.041277 0.022572 3
20 0.041147 1.028932 0.008607 3

Total number of rows: 2463

Table truncated, full table size 77 Kbytes.




Supplementary data files not provided
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