|
Status |
Public on Aug 08, 2024 |
Title |
Nasal swab cells, K9_CR_3251 |
Sample type |
SRA |
|
|
Source name |
nasal swab cells
|
Organism |
Canis lupus familiaris |
Characteristics |
tissue: nasal swab cells disease: rhinitis
|
Treatment protocol |
RNA Later preservation, PBS wash
|
Growth protocol |
Nasal swabs
|
Extracted molecule |
total RNA |
Extraction protocol |
Rneasy Mini Takara Bio SMARTseq
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 4000 |
|
|
Data processing |
Partek Flow software, version 10.0 filtered by removing reads containing adapters and reads containing N > 10% and for Phred scores >30 Filtered reads were aligned with STAR 2.7.3a, using CanFam3.1 genome Aligned reads were annotated and counted using HT-seq differentially expressed genes were identified using DEseq2 Assembly: CanFam3.1 Supplementary files format and content: txt file with median ratio normalized counts
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|
|
Submission date |
Feb 09, 2024 |
Last update date |
Aug 08, 2024 |
Contact name |
Steven Dow |
E-mail(s) |
sdow@colostate.edu
|
Organization name |
Colorado State University
|
Department |
Clinical Sciences
|
Lab |
ACC 254
|
Street address |
300 W Drake Rd
|
City |
Fort Collins |
State/province |
CO |
ZIP/Postal code |
80524 |
Country |
USA |
|
|
Platform ID |
GPL24229 |
Series (1) |
GSE255529 |
Host-Microbe Interactions in the Nasal Cavity of Dogs with Chronic Idiopathic Rhinitis |
|
Relations |
BioSample |
SAMN39909518 |
SRA |
SRX23592445 |