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Sample GSM8106132 Query DataSets for GSM8106132
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCLB415FWH)
Sample type SRA
 
Source name Drosophila melanogaster strain CG3065-GFP mixed sex embryo (0-16 hours) insertion targeting D. melanogaster CG3065
Organism Drosophila melanogaster
Characteristics antibody: CG3065
cell_type: whole organism
biomaterial_type: whole organisms
biosample encode accession: ENCBS649YNY (SAMN40087486)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS649YNY
note: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG3065
Sex: pooled male and female
dev stage: embryonic
age: 0-16 hour
donor_id: ENCDO859ZDI
lab: Kevin White, UChicago
source: Kevin White
link: ENCBS649YNY at ENCODE; https://www.encodeproject.org/ENCBS649YNY/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/47d3fb40-f2e5-427a-9e29-501dfdaf41fb/@@download/attachment/modENCODE_protocols_Column_SPRI.pdf
other: https://www.encodeproject.org/documents/2ab517a3-a6d8-4365-97f4-87cac4286d82/@@download/attachment/2016-421.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR101LNT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG3065-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR101LNT
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR903IOU
encode release date: 2016-09-29
lab: Kevin White, UChicago
library encode accession: ENCLB415FWH
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Feb 24, 2024
Last update date Feb 27, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13304
Series (1)
GSE256549 TF ChIP-seq from whole organism (ENCSR101LNT)
Relations
BioSample SAMN40087486

Supplementary file Size Download File type/resource
GSM8106132_ENCFF005UBI_control_normalized_signal_dm6.bigWig 16.5 Mb (ftp)(http) BIGWIG
GSM8106132_ENCFF039MUU_peaks_and_background_as_input_for_IDR_dm6.bigBed 1.2 Mb (ftp)(http) BIGBED
GSM8106132_ENCFF130YFC_control_normalized_signal_dm3.bigWig 15.1 Mb (ftp)(http) BIGWIG
GSM8106132_ENCFF456AMV_read-depth_normalized_signal_dm6.bigWig 16.5 Mb (ftp)(http) BIGWIG
GSM8106132_ENCFF477HPW_peaks_and_background_as_input_for_IDR_dm3.bigBed 1.2 Mb (ftp)(http) BIGBED
GSM8106132_ENCFF732AIS_peaks_and_background_as_input_for_IDR_dm6.bed.gz 752.9 Kb (ftp)(http) BED
GSM8106132_ENCFF748KNW_signal_of_unique_reads_dm3.bigWig 14.5 Mb (ftp)(http) BIGWIG
GSM8106132_ENCFF766KTG_read-depth_normalized_signal_dm3.bigWig 14.5 Mb (ftp)(http) BIGWIG
GSM8106132_ENCFF844OOI_peaks_and_background_as_input_for_IDR_dm3.bed.gz 752.7 Kb (ftp)(http) BED
GSM8106132_ENCFF979KSZ_signal_of_unique_reads_dm6.bigWig 16.6 Mb (ftp)(http) BIGWIG
GSM8106132_ENCLB415FWH_README.txt.gz 1.8 Kb (ftp)(http) TXT
Raw data are available in SRA

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