|
| Status |
Public on Feb 27, 2024 |
| Title |
TF ChIP-seq from whole organism (ENCLB379ZKI) |
| Sample type |
SRA |
| |
|
| Source name |
Drosophila melanogaster strain ara-GFP embryo (0-24 hours) insertion targeting D. melanogaster ara
|
| Organism |
Drosophila melanogaster |
| Characteristics |
antibody: ara
cell_type: whole organism
biomaterial_type: whole organisms
biosample encode accession: ENCBS270YYI (SAMN40086660)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS270YYI
Sex: not collected
dev stage: embryonic
age: 0-24 hour
donor_id: ENCDO379YBX
lab: Kevin White, UChicago
source: Kevin White
link: ENCBS270YYI at ENCODE; https://www.encodeproject.org/ENCBS270YYI/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/f890fde6-924c-4265-a60f-c5810401066d/@@download/attachment/modENCODE_protocols_Phenol_SPRI.pdf
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR283CFB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing ara-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR283CFB
assay title: TF ChIP-seq
assembly: dm6
possible controls: ENCSR966CJP
encode release date: 2022-11-01
lab: Kevin White, UChicago
library encode accession: ENCLB379ZKI
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Feb 24, 2024 |
| Last update date |
Feb 27, 2024 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL25244 |
| Series (1) |
| GSE256566 |
TF ChIP-seq from whole organism (ENCSR283CFB) |
|
| Relations |
| BioSample |
SAMN40086660 |
